PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027280-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 360aa    MW: 39599.7 Da    PI: 4.7551
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027280-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.3e-102863261055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  WALNUT_00027280-RA 286 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 326
                         9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.224276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-14276341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-12281335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.28E-12285330No hitNo description
PfamPF000101.1E-7286326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEPMGAICER EWGSLGGMYI AEESEFMAQL LHNNASLPND LIGDSSLRAP SDFWPGYESN  60
MNGEGLSESS YFSLYMPSSN FYSFSQESNY NGGSSGQQCY GSSDSHPVLA SDDSSISMDF  120
CMMNVKRTGS FLLEGYDCLN QEKTDGNAEE SAGNVPAVVL HSEKDSQHRK ESEKPPPESI  180
PEEKCNNPPG NSKKRSQSSR DIRKKKRMAQ SEKNKKTGSN EEDSNPGIGE QSSGSFSSED  240
DCTASQELNG GASSGLSRKV PASPDLNGKT RASRGSATDP QSLYARKRRE RINERLRILQ  300
NLVPNGTKVD ISTMLEEAVQ YVKFLQLQIK LLSSDDLWMY APIAYNGMDL GLDLKINPPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192206KKRSQSSRDIRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030345.11e-119PREDICTED: transcription factor bHLH85-like
TrEMBLB9HMZ01e-118B9HMZ0_POPTR; Basic helix-loop-helix family protein
STRINGPOPTR_0009s09210.11e-117(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-46bHLH family protein